Welcome to UC Merced Cognitive & Information Sciences Graduate Student Group

Exploring Minds, Sharing Knowledge

Simply submit your contributions through easy-to-use forms, and watch them become part of a growing, dynamic resource.

Confrences & Symposiums

A list of events that may be of interest to CIS graduate students for presenting research, connecting with peers, or industry networking.

Publications Hub

This page showcases the latest research papers published by our students and faculty. Explore a diverse range of work that reflects the innovative and interdisciplinary nature of our department.

Seminal Reads: Faculty Recommendations

This page is a curated collection of papers recommended by our faculty. While not part of any class or required reading, these selections are shared for those looking to deepen their understanding and expand their academic horizons. Dive in, explore, and discover the texts that are deemed worthy.

Upcoming Events

TitleDateLocation
Brainwaives & Brews18 Oct 2024315 W Main St Merced, CA 95340
CIS Supper Club24 Oct 2024731 E Yosemite Ave ste c, Merced, CA 95340
Brainwaives & Brews25 Oct 2024315 W Main St Merced, CA 95340
Brainwaives & Brews01 Nov 2024315 W Main St Merced, CA 95340
Brainwaives & Brews08 Nov 2024315 W Main St Merced, CA 95340
Brainwaives & Brews15 Nov 2024315 W Main St Merced, CA 95340
CIS Supper Club21 Nov 2024731 E Yosemite Ave ste c, Merced, CA 95340

Past Events

TitleDateLocation
Brainwaives & Brews11 Oct 2024315 W Main St Merced, CA 95340

Helpful Materials Hosted on the UCM Box App

Think Complexity

Think Complexity

Complexity science is an interdisciplinary field — at the intersection of mathematics, computer science and natural science — that focuses on complex systems, which are systems with many interacting components. One of the core tools of complexity science is discrete models, including networks and graphs, cellular automatons, and agent-based simulations. These tools are useful in the natural and social sciences, and sometimes in arts and humanities.

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PyCX

PyCX

The PyCX project aims to develop an online repository of simple, crude, yet easy-to-understand Python sample codes for dynamic complex systems modeling and simulation, including iterative maps, ordinary and partial differential equations, cellular automata, network analysis, dynamical networks, and agent-based models. You can run, read and modify any of its codes to learn the basics of complex systems modeling and simulation in Python.

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EEGLAB

Explore EEGLAB, the powerful open-source MATLAB toolbox developed by UC San Diego's Swartz Center for Computational Neuroscience.

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ERP Lab

Open-source MATLAB toolbox tailored for advanced event-related potential (ERP) data analysis. Developed by, and for the ERP research community, ERPLAB builds upon the functionalities of EEGLAB, offering specialized tools for preprocessing, artifact detection, waveform visualization, and statistical analysis.

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FieldTrip

Discover FieldTrip, the powerful open-source MATLAB toolbox tailored for analyzing MEG, EEG, iEEG, and other electrophysiological data.

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MNE-Python

MEG and EEG data analysis with MNE-Python! This in-depth tutorial provides an overview of the powerful tools and workflows available in MNE-Python for processing neurophysiological data. Learn how to import, preprocess, visualize, and analyze your MEG/EEG datasets using cutting-edge techniques.

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Stanford Encyclopedia of Philosophy

Organizes scholars from around the world in philosophy and related disciplines to create and maintain an up-to-date reference work.

Internet Encyclopedia of Philosophy

The IEP provides open-access, peer-reviewed articles on a wide range of philosophical topics, including philosophy of mind, cognitive science, and related disciplines.

PhilPapers

A comprehensive index and bibliography of philosophy maintained by the community of philosophers. It includes thousands of academic papers and books in philosophy of cognitive science, many of which are freely available for download.

CogPrints

CogPrints is an electronic archive for papers in psychology, neuroscience, linguistics, computer science, philosophy, and biology, all areas pertinent to the study of cognition.

PhilSci-Archive

An electronic archive for preprints in the philosophy of science, including philosophy of cognitive science and mind.

The Brains Blog

A group blog focused on philosophy of mind, psychology, and cognitive science.

OpenCourseWare – Brain and Cognitive Sciences

MIT provides free access to course materials on topics intersecting philosophy and cognitive science, including courses on cognitive neuroscience and philosophy of mind.

Society for Philosophy and Psychology

The purpose of the SPP is to promote interaction between philosophers, psychologists and other cognitive scientists on issues of common concern.

CogNet (MIT Press)

CogNet offers some open-access resources and is a valuable repository for cognitive science research.

R for Data Science (2e) *Free*

R for Data Science (2e) *Free*

7/18/2023

Written by the creater of the Tidyverse R Universe, "R for Data Science (2e)" is a comprehensive, free online resource for learning how to do data science using R. This book covers all the essential skills: from getting data into R, transforming it into the right structure, to visualizing and exploring it. You'll master best practices in data wrangling, plotting, and even learn about the grammar of graphics, literate programming, and reproducible research—all to streamline your workflow and facilitate discovery. This freely accessible book is licensed under CC BY-NC-ND 3.0, and if you find it valuable, consider supporting the critically endangered kākāpō parrot, featured on the cover, by donating to Kākāpō Recovery.

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Comprehensive Links and resources

Comprehensive Links and resources

9/26/2024

This collaborative guide offers a comprehensive resource for working with R, RMarkdown, and Quarto, providing users with best practices, tutorials, and tips for data manipulation, visualization, and reproducibility. Developed by Gilad Feldman at the University of Hong Kong, it invites contributions from the community to enhance its content. The guide is packed with useful information on R packages, statistical methods, AI tools, and more, making it ideal for anyone looking to deepen their skills in R for data science or academic work.

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R for Graduate Students

R for Graduate Students

8/6/2019

This free online book by Wendy Huynh, a PhD student in behavioral neuroscience, is a user-friendly guide for beginners in R programming. Starting as a series of assignments to teach a fellow graduate student, it quickly expanded into a comprehensive resource tailored to those in the sciences who want to learn R from scratch. With relatable examples and step-by-step explanations, this book is perfect for anyone struggling to find a practical, beginner-focused guide to R that is relevant to their field. Wendy’s passion for teaching shines through, offering readers an approachable path to mastering data management in R.

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YaRrr! The Pirate’s Guide to R

YaRrr! The Pirate’s Guide to R

1/22/2018

Set sail on your R programming journey with "YaRrr! The Pirate’s Guide to R"—a humorous, step-by-step resource perfect for absolute beginners. This book breaks down R's complexities in an easy-to-understand way, using entertaining examples and playful explanations to keep you engaged. With a light-hearted tone, it guides you through everything from the basics of data manipulation to creating visualizations. The book is a few years old, but if you're overwhelmed by the R for Data Science book and looking for a fun and accessible way to start without taking the wind out of your sails, this guide is sure to help you navigate the seas of data science with a smile!

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R Tutorials & Resources for nonlinear analyses

R Tutorials & Resources for nonlinear analyses

9/13/2023

Tools and tutorials located in Github to help with recurrence quantification analysis (RQA), cross-recurrence quantification analysis (CRQA), and detrended fluctuation analysis (DFA).

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Anova in R

Anova in R

2/1/2020

This thread by @WeAreRLadies provides a practical and concise guide to performing ANOVA in R, addressing the most frequent questions clients ask about running linear models, hypothesis testing, and extracting means. The author covers key concepts like formula notation, the limitations of certain functions, and provides recommendations for handling different types of data, including balanced and unbalanced datasets. This resource is a great starting point for anyone looking to navigate ANOVA in R effectively.

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Linear models and linear mixed effects models in R with linguistic applications

Linear models and linear mixed effects models in R with linguistic applications

8/26/2013

This tutorial by Bodo Winter provides a conceptual introduction to linear models and linear mixed-effects models, focusing on their application within R for linguistic data analysis. With practical examples and hands-on exercises, the guide is designed to quickly build your understanding of these powerful statistical tools. Whether or not you have a background in linguistics, this tutorial will help you start analyzing your data and understand key concepts such as variance explained, significance, and model coefficients. Dive in and boost your knowledge in just a couple of hours!

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Official CIS Site

Official CIS Site

This CIS GSG site that you are currently on, is meant to accompany the CIS program's official website, at cogsci.ucmerced.edu. Visit the official website to learn more about current students and faculty and for guidance regarding program requirements. Although we've tried to include up to date information, always keep in contact with your committee, UCM Graduate Division, or ask your fellow grad students if you need any help navigating the paperwork side of the PhD process.

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Graduate Division Sites

Links to UC Merced Graduate Division's General Site & Facebook page. Also there is a link to the Graduate Division's Current Students page. There, you'll find essential information on academic policies, important deadlines, funding opportunities, and professional development programs. Whether you need guidance on thesis submission, access to forms, or support services, this hub is designed to help you navigate and thrive throughout your graduate journey.

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Housing Options

Housing Options

Looking for housing options near UC Merced? The Off-Campus Housing Services page provides resources to help students find accommodations beyond the campus grounds. Whether you're searching for rental listings, roommate connections, or housing tips, this site is your go-to resource for securing the right place to live while studying at UC Merced.

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UC Merced FB Groups

Looking for textbooks, housing, or social events at UC Merced? These Facebook groups provide a platform to connect with fellow students. You can post classifieds for items like books or cars, find housing opportunities, or discover social events for graduate students. The groups also offer a way to RSVP for activities and find roommates.

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UC Merced Available Software

UC Merced Available Software

Explore the UC Merced Software List to discover a wide array of tools available for students, faculty, and staff. From statistical software to productivity suites, this resource offers details on what’s accessible through the university's licenses. Notably, SPSS—perfect for all your statistical analysis needs—is available on lab computers through the university's enterprise license, providing you access at your favorite price!

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2024-2025 Graduate Student Group Executive Committee Officers

Shervin Nosrati

Chair

As chair, Shervin is our fearless timekeeper - ensuring meetings are productive and punctual. His research interests focus on metaphor, gesture, and embodied cognition, and he is affiliated with the Marghetis Lab. He has contributed to research on how spatial metaphors are used to understand complex concepts, such as time-travel narratives, by analyzing how people use gestures to represent time during storytelling.

Adam Holm

Professional Development Officer

Adam has planned and will coordinate several professional development workshops this year, stay tuned for the topics and dates. His research focuses on the perception of errors and the role of uncertainty in consciousness. He is affiliated with the Backer and Shahin labs.

Soran Malaie

Social & Community Officer

Soran's duty is to bring the party to life, and is often the life of the party. His research interests include embodied cognition, dynamical systems theory, ecological psychology, and phenomenology. He is affiliated with both the Marghetis and Spivey labs.

Melissa Almeida

Media Communications Officer

Melissa is the resident techie and has taken on the reconceptualization of the website. Her research interests include embodied cognition, AR/VR technology, and human-computer interaction in pedagogy. She is affiliated with the Aguirre-Munoz lab​.

Liantao "Tony" Shan

GSA Delegate

Tony is the liason between the Graduate Student Association and the CIS graduate students. He will dutifully take your concerns to the GSA - who will present them to the powers that be. His research focuses on bilingualism and cognition, bilingualism in education, language and thought, and metaphor. He is affiliated with the Aguirre-Munoz lab​

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